Variant report
| Variant | rs16907514 |
|---|---|
| Chromosome Location | chr12:12061226-12061227 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs55977745 | 1.00[AMR][1000 genomes] |
| rs56140733 | 1.00[AMR][1000 genomes] |
| rs57312986 | 1.00[AMR][1000 genomes] |
| rs57699137 | 1.00[AMR][1000 genomes] |
| rs57833941 | 1.00[AMR][1000 genomes] |
| rs57891658 | 1.00[AMR][1000 genomes] |
| rs58453187 | 1.00[AMR][1000 genomes] |
| rs58842201 | 1.00[AMR][1000 genomes] |
| rs59632980 | 1.00[AMR][1000 genomes] |
| rs59843195 | 1.00[AMR][1000 genomes] |
| rs73275248 | 1.00[AMR][1000 genomes] |
| rs73290521 | 1.00[AMR][1000 genomes] |
| rs73290524 | 1.00[AMR][1000 genomes] |
| rs73290599 | 1.00[AMR][1000 genomes] |
| rs74060863 | 1.00[AMR][1000 genomes] |
| rs74060864 | 1.00[AMR][1000 genomes] |
| rs74060865 | 1.00[AMR][1000 genomes] |
| rs74060867 | 1.00[AMR][1000 genomes] |
| rs74060875 | 1.00[AMR][1000 genomes] |
| rs74060876 | 1.00[AMR][1000 genomes] |
| rs74060879 | 1.00[AMR][1000 genomes] |
| rs74060881 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832331 | chr12:11925095-12114451 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv949003 | chr12:11938229-12618690 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 3 | nsv898804 | chr12:12058411-12202173 | Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:12060600-12062600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
