Variant report

Variant	rs1690760
Chromosome Location	chr1:62956137-62956138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10889341	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1167995	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1167997	1.00[AMR][1000 genomes]
rs1168008	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168016	0.87[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168038	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168048	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168088	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168091	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs1168125	1.00[AMR][1000 genomes]
rs1690765	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1748194	1.00[AMR][1000 genomes]
rs1781215	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2029764	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801387	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813926	0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34186185	1.00[AMR][1000 genomes]
rs584387	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs593519	0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs612455	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs657444	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs660642	0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701517	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9436660	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817371	chr1:62901935-63129697	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv1829390	chr1:62931632-62997573	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62909800-62977000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:62915400-62966600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr1:62916000-62977200	Weak transcription	Right Ventricle	heart
4	chr1:62916200-62960000	Weak transcription	Spleen	Spleen
5	chr1:62916200-62963200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr1:62916600-62976600	Weak transcription	Psoas Muscle	Psoas
7	chr1:62919000-62959200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:62920000-62971000	Weak transcription	Thymus	Thymus
9	chr1:62920000-62980200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:62922600-62982000	Weak transcription	A549	lung
11	chr1:62923200-62979200	Weak transcription	Fetal Thymus	thymus
12	chr1:62934400-62981200	Weak transcription	Stomach Mucosa	stomach
13	chr1:62937400-62957200	Weak transcription	Colonic Mucosa	Colon
14	chr1:62937400-62960000	Weak transcription	Pancreas	Pancrea
15	chr1:62937600-62957000	Weak transcription	Lung	lung
16	chr1:62938000-62960000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:62938000-62966600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:62938800-62956600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:62938800-62973800	Weak transcription	Esophagus	oesophagus
20	chr1:62939000-62957000	Weak transcription	HSMMtube	muscle
21	chr1:62939200-62978200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:62939600-62956600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:62939600-62999800	Weak transcription	Gastric	stomach
24	chr1:62939600-63040600	Weak transcription	Aorta	Aorta
25	chr1:62939800-62956800	Weak transcription	Left Ventricle	heart
26	chr1:62939800-62961600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr1:62939800-63044400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:62939800-63060200	Weak transcription	Small Intestine	intestine
29	chr1:62941000-62959200	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:62941000-63001000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:62941200-62956800	Weak transcription	Primary T cells from cord blood	blood
32	chr1:62941600-62956400	Weak transcription	HMEC	breast
33	chr1:62941600-62956800	Weak transcription	Brain Substantia Nigra	brain
34	chr1:62941600-62957000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:62941600-62959200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr1:62941600-62959800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr1:62941600-62975400	Weak transcription	NHLF	lung
38	chr1:62941600-62978600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr1:62941600-62981400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr1:62941600-62998200	Weak transcription	Fetal Heart	heart
41	chr1:62941600-63011800	Weak transcription	Brain Hippocampus Middle	brain
42	chr1:62941800-62957000	Weak transcription	Fetal Lung	lung
43	chr1:62941800-62957000	Weak transcription	NH-A	brain
44	chr1:62941800-62972600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:62941800-62978400	Weak transcription	NHEK	skin
46	chr1:62941800-62982000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr1:62941800-62984600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr1:62941800-63030200	Weak transcription	Brain Angular Gyrus	brain
49	chr1:62942000-62957000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr1:62942000-62959200	Weak transcription	Fetal Kidney	kidney

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