Variant report

Variant	rs9436660
Chromosome Location	chr1:62903763-62903764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:62903692..62905802-chr1:63153946..63155842,2	K562	blood:
2	chr1:62901903..62904232-chr1:63787330..63789698,2	K562	blood:
3	chr1:61519005..61521478-chr1:62902730..62905153,2	K562	blood:
4	chr1:62903198..62905557-chr1:63182808..63185122,2	K562	blood:
5	chr1:62903526..62905902-chr1:62994645..62996175,2	K562	blood:

Variant related genes	Relation type
ENSG00000230798	Chromatin interaction
ENSG00000235545	Chromatin interaction
ENSG00000116641	Chromatin interaction
ENSG00000162599	Chromatin interaction
ENSG00000187140	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10889341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1167995	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1167997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168008	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168016	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168025	1.00[MKK][hapmap]
rs1168038	1.00[AMR][1000 genomes]
rs1168048	1.00[AMR][1000 genomes]
rs1168088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168091	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168125	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1690760	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1690765	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1748194	0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781215	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2029764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2813926	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34186185	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs584387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs593519	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs612455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs657444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs660642	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
2	esv1817371	chr1:62901935-63129697	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62900400-62904200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:62901000-62903800	Active TSS	H1 Cell Line	embryonic stem cell
3	chr1:62901000-62903800	Active TSS	Fetal Lung	lung
4	chr1:62901000-62904000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr1:62901000-62904000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr1:62901000-62904200	Active TSS	H9 Cell Line	embryonic stem cell
7	chr1:62901000-62904200	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr1:62901000-62904400	Active TSS	Psoas Muscle	Psoas
9	chr1:62901000-62904600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:62901000-62904600	Active TSS	Fetal Kidney	kidney
11	chr1:62901000-62904600	Active TSS	Right Ventricle	heart
12	chr1:62901000-62904800	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr1:62901000-62904800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:62901000-62904800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:62901000-62905000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:62901000-62905000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr1:62901000-62905000	Active TSS	HSMM	muscle
18	chr1:62901000-62905200	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr1:62901000-62905200	Active TSS	A549	lung
20	chr1:62901000-62905600	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr1:62901000-62905800	Active TSS	NHLF	lung
22	chr1:62901000-62906200	Active TSS	GM12878-XiMat	blood
23	chr1:62901200-62903800	Active TSS	Placenta Amnion	Placenta Amnion
24	chr1:62901200-62904000	Active TSS	Colonic Mucosa	Colon
25	chr1:62901200-62904000	Active TSS	Lung	lung
26	chr1:62901200-62904000	Active TSS	Small Intestine	intestine
27	chr1:62901200-62904200	Active TSS	Fetal Muscle Trunk	muscle
28	chr1:62901200-62904200	Active TSS	Left Ventricle	heart
29	chr1:62901200-62904200	Active TSS	Ovary	ovary
30	chr1:62901200-62904400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr1:62901200-62904400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:62901200-62904800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr1:62901400-62903800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:62901400-62903800	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr1:62901400-62903800	Active TSS	Colon Smooth Muscle	Colon
36	chr1:62901400-62904000	Active TSS	Aorta	Aorta
37	chr1:62901400-62904000	Active TSS	Fetal Heart	heart
38	chr1:62901400-62904000	Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr1:62901400-62904200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr1:62901400-62904200	Active TSS	Placenta	Placenta
41	chr1:62901400-62904200	Active TSS	Gastric	stomach
42	chr1:62901400-62904200	Active TSS	Pancreas	Pancrea
43	chr1:62901400-62904400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:62901400-62904400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:62901400-62904600	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr1:62901400-62904800	Active TSS	Fetal Thymus	thymus
47	chr1:62901400-62904800	Active TSS	Thymus	Thymus
48	chr1:62901400-62905000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:62901400-62905000	Active TSS	NHDF-Ad	bronchial
50	chr1:62901400-62905800	Active TSS	K562	blood

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