Variant report

Variant	rs16907818
Chromosome Location	chr11:10457244-10457245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55942273	1.00[AMR][1000 genomes]
rs56125701	0.85[AFR][1000 genomes]
rs57027877	1.00[AFR][1000 genomes]
rs61484295	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10448600-10460000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10456400-10457400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:10456600-10457400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:10457200-10459000	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:10457200-10459200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:10457200-10459600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:10457200-10460200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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