Variant report

Variant	rs57027877
Chromosome Location	chr11:10437902-10437903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16907818	1.00[AFR][1000 genomes]
rs56125701	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10430000-10441000	Weak transcription	Right Atrium	heart
2	chr11:10432800-10438000	Weak transcription	Psoas Muscle	Psoas
3	chr11:10434400-10438400	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:10434600-10438400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:10435400-10438400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:10436000-10438800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:10436600-10439400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:10436600-10439600	Weak transcription	Osteobl	bone
9	chr11:10436600-10439800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:10436800-10439000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:10436800-10439800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:10437000-10438400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr11:10437000-10438600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:10437200-10438400	Weak transcription	Spleen	Spleen
15	chr11:10437200-10438800	Weak transcription	NHDF-Ad	bronchial
16	chr11:10437400-10439200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:10437600-10440400	Weak transcription	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links