Variant report

Variant	rs16908020
Chromosome Location	chr11:10622278-10622279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10594420..10597272-chr11:10621485..10623481,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16907969	1.00[AMR][1000 genomes]
rs16907980	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs16908007	1.00[AMR][1000 genomes]
rs16908024	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16908026	1.00[AMR][1000 genomes]
rs16908041	1.00[AMR][1000 genomes]
rs16908056	1.00[AMR][1000 genomes]
rs57885429	1.00[AMR][1000 genomes]
rs60410009	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10592400-10622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:10607400-10626000	Weak transcription	Fetal Lung	lung
6	chr11:10608800-10625400	Weak transcription	Adipose Nuclei	Adipose
7	chr11:10611600-10625000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:10615000-10625600	Weak transcription	Osteobl	bone
9	chr11:10615200-10625600	Weak transcription	NHDF-Ad	bronchial
10	chr11:10615800-10625600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:10616800-10625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:10616800-10625400	Weak transcription	HMEC	breast
13	chr11:10617400-10623400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:10617600-10626800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:10617600-10627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:10619200-10625400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:10619800-10622600	Enhancers	HepG2	liver
18	chr11:10619800-10623200	Weak transcription	K562	blood
19	chr11:10620000-10622600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr11:10620000-10623200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:10620400-10622400	Genic enhancers	Colon Smooth Muscle	Colon
23	chr11:10620400-10623600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr11:10620400-10630000	Enhancers	Fetal Muscle Leg	muscle
25	chr11:10620400-10630200	Enhancers	Fetal Thymus	thymus
26	chr11:10620600-10622400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:10620600-10622800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:10620600-10622800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:10620600-10623000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:10620600-10623000	Enhancers	Lung	lung
31	chr11:10620600-10623600	Enhancers	Psoas Muscle	Psoas
32	chr11:10620800-10622400	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr11:10620800-10622800	Genic enhancers	Fetal Stomach	stomach
34	chr11:10620800-10623000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr11:10620800-10626400	Enhancers	Placenta	Placenta
36	chr11:10621000-10622600	Enhancers	Fetal Kidney	kidney
37	chr11:10621000-10622800	Enhancers	Thymus	Thymus
38	chr11:10621000-10623800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr11:10621000-10626400	Enhancers	Fetal Muscle Trunk	muscle
40	chr11:10621200-10623800	Enhancers	HSMMtube	muscle
41	chr11:10621200-10625800	Strong transcription	NHLF	lung
42	chr11:10621200-10627400	Weak transcription	Brain Anterior Caudate	brain
43	chr11:10621400-10622400	Genic enhancers	Aorta	Aorta
44	chr11:10621400-10622400	Enhancers	Right Atrium	heart
45	chr11:10621400-10623400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:10621400-10623400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:10621400-10625800	Weak transcription	Fetal Intestine Large	intestine
48	chr11:10621400-10626000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:10621600-10622600	Weak transcription	Ovary	ovary
50	chr11:10621600-10623400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links