Variant report

Variant	rs60410009
Chromosome Location	chr11:10648222-10648223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16907969	1.00[AMR][1000 genomes]
rs16907980	1.00[AMR][1000 genomes]
rs16908007	1.00[AMR][1000 genomes]
rs16908020	1.00[AMR][1000 genomes]
rs16908024	1.00[AMR][1000 genomes]
rs16908026	1.00[AMR][1000 genomes]
rs16908041	1.00[AMR][1000 genomes]
rs16908056	1.00[AMR][1000 genomes]
rs57885429	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10650800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:10637800-10659200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:10639800-10661600	Weak transcription	Gastric	stomach
6	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
7	chr11:10643600-10652400	Strong transcription	NHLF	lung
8	chr11:10643600-10653400	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:10644000-10659600	Weak transcription	Osteobl	bone
10	chr11:10645000-10649200	Genic enhancers	Stomach Smooth Muscle	stomach
11	chr11:10645200-10648400	Enhancers	Colon Smooth Muscle	Colon
12	chr11:10646000-10649800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:10646000-10649800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:10646000-10649800	Weak transcription	Thymus	Thymus
15	chr11:10646000-10661600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
17	chr11:10646200-10649800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:10646200-10649800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:10646200-10649800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:10646200-10661400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:10646400-10649400	Weak transcription	Fetal Thymus	thymus
23	chr11:10646400-10649600	Weak transcription	Primary T cells from cord blood	blood
24	chr11:10646400-10649800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:10646400-10650000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:10646400-10659400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:10646600-10648400	Enhancers	Fetal Muscle Leg	muscle
28	chr11:10646600-10649800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:10646800-10649800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr11:10646800-10650400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
32	chr11:10647000-10648400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:10647200-10653000	Weak transcription	Esophagus	oesophagus
34	chr11:10647200-10659000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:10647400-10649000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr11:10647400-10649800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:10647400-10649800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:10647400-10659200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:10647400-10659200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:10647600-10649400	Weak transcription	Primary B cells from cord blood	blood
41	chr11:10647600-10649800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:10647600-10650000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:10647600-10650000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:10647600-10651000	Enhancers	Placenta Amnion	Placenta Amnion
45	chr11:10647800-10648600	Enhancers	NHDF-Ad	bronchial
46	chr11:10647800-10648800	Weak transcription	Fetal Intestine Small	intestine
47	chr11:10647800-10656800	Strong transcription	Aorta	Aorta
48	chr11:10647800-10658000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:10648000-10648800	Enhancers	Brain Substantia Nigra	brain
50	chr11:10648000-10648800	Enhancers	Right Ventricle	heart

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