Variant report

Variant	rs16910215
Chromosome Location	chr9:98537822-98537823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98535314..98537899-chr9:98637650..98639305,2	K562	blood:
2	chr9:98536258..98539012-chr9:98551915..98554297,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182150	Chromatin interaction
ENSG00000175611	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34397424	1.00[EUR][1000 genomes]
rs55848634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56067493	1.00[EUR][1000 genomes]
rs56138462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56204277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58978775	1.00[EUR][1000 genomes]
rs6478967	1.00[EUR][1000 genomes]
rs7028929	1.00[EUR][1000 genomes]
rs73656535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73656536	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98534200-98539800	Weak transcription	Lung	lung
2	chr9:98534800-98539200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:98535200-98539000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:98535400-98538600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:98535400-98550800	Weak transcription	Right Atrium	heart
6	chr9:98535600-98538600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:98535600-98539800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:98535600-98545800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:98536000-98546800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:98536400-98541400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:98537000-98539000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:98537200-98538000	Enhancers	Pancreas	Pancrea
13	chr9:98537400-98541000	Weak transcription	HepG2	liver
14	chr9:98537600-98538600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:98537600-98539800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:98537800-98539000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:98537800-98539200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:98537800-98539200	Enhancers	Fetal Lung	lung
19	chr9:98537800-98539800	Enhancers	Fetal Stomach	stomach
20	chr9:98537800-98541200	Weak transcription	Ovary	ovary

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