Variant report

Variant	rs16910229
Chromosome Location	chr9:26171046-26171047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10967216	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16910199	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs16910203	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16910205	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73441633	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73441635	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73441636	0.84[AFR][1000 genomes]
rs73441645	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892845	chr9:26121103-26179065	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv892846	chr9:26127824-26179065	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv892847	chr9:26134888-26210141	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv892848	chr9:26151961-26191574	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv613927	chr9:26153793-26284317	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv613928	chr9:26154827-26194166	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26168600-26172200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:26169000-26171600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:26169200-26175600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:26169800-26172400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:26170200-26172200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:26170200-26176400	Enhancers	NHDF-Ad	bronchial
7	chr9:26170600-26171600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:26170600-26171600	Weak transcription	NHEK	skin
9	chr9:26170800-26171200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:26170800-26171800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:26170800-26171800	Weak transcription	HMEC	breast
12	chr9:26170800-26172000	Weak transcription	Hela-S3	cervix
13	chr9:26170800-26173000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:26170800-26173000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:26170800-26175200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:26171000-26171400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:26171000-26171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:26171000-26171600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:26171000-26174600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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