Variant report

Variant	rs16910907
Chromosome Location	chr9:26961836-26961837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10967605	0.97[EUR][1000 genomes]
rs11999605	1.00[CEU][hapmap]
rs12000190	0.86[EUR][1000 genomes]
rs12000194	0.94[EUR][1000 genomes]
rs12000403	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000745	0.91[EUR][1000 genomes]
rs12000936	0.97[EUR][1000 genomes]
rs12002016	0.97[EUR][1000 genomes]
rs12002242	0.97[EUR][1000 genomes]
rs12002247	0.91[EUR][1000 genomes]
rs12002844	0.97[EUR][1000 genomes]
rs12002995	0.97[EUR][1000 genomes]
rs12003566	1.00[EUR][1000 genomes]
rs12004175	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004404	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12005788	0.91[EUR][1000 genomes]
rs12005943	0.97[EUR][1000 genomes]
rs12005959	0.97[EUR][1000 genomes]
rs13287000	0.83[AMR][1000 genomes]
rs16910929	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28581753	0.91[EUR][1000 genomes]
rs35138802	0.83[AMR][1000 genomes]
rs41271179	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59452957	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60097289	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043002	0.97[EUR][1000 genomes]
rs73643108	0.82[EUR][1000 genomes]
rs73643115	0.94[EUR][1000 genomes]
rs73643116	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957000-26973800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:26957000-26980800	Weak transcription	Lung	lung
3	chr9:26957000-26983200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:26957000-26984400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:26957000-27024000	Weak transcription	Esophagus	oesophagus
6	chr9:26957200-26962000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:26957200-26962200	Weak transcription	Thymus	Thymus
8	chr9:26957200-26976000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:26957200-26980800	Weak transcription	Fetal Intestine Large	intestine
10	chr9:26957200-26980800	Weak transcription	Fetal Stomach	stomach
11	chr9:26957200-26982600	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:26957200-26982600	Weak transcription	Left Ventricle	heart
13	chr9:26957200-26983200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr9:26957200-26983200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:26957200-26984400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:26957200-26984400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr9:26957200-26984600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:26957200-26984800	Weak transcription	Primary B cells from cord blood	blood
19	chr9:26957200-26984800	Weak transcription	Fetal Thymus	thymus
20	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:26957400-26962000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr9:26957400-26962000	Weak transcription	Liver	Liver
24	chr9:26957400-26962200	Weak transcription	Fetal Lung	lung
25	chr9:26957400-26963800	Weak transcription	NHLF	lung
26	chr9:26957400-26964800	Weak transcription	Primary T cells from cord blood	blood
27	chr9:26957400-26974800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:26957400-26978200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr9:26957400-26980800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr9:26957400-26982800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:26957400-26983200	Weak transcription	Brain Anterior Caudate	brain
32	chr9:26957400-26983400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr9:26957400-26984600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr9:26957600-26962000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:26957600-26965800	Weak transcription	Fetal Brain Female	brain
36	chr9:26957600-26975200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:26957600-26979400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:26957600-26982800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:26957600-26983200	Weak transcription	Fetal Kidney	kidney
40	chr9:26957600-26983400	Weak transcription	Brain Angular Gyrus	brain
41	chr9:26957600-26984800	Weak transcription	Brain Hippocampus Middle	brain
42	chr9:26957800-26962000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:26957800-26963800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr9:26957800-26965000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr9:26957800-26974600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr9:26957800-26975600	Weak transcription	Fetal Intestine Small	intestine
47	chr9:26957800-26976600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:26957800-26984600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr9:26958400-26965000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr9:26958600-26962000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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