Variant report

Variant	rs73643108
Chromosome Location	chr9:26810243-26810244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10967605	0.85[EUR][1000 genomes]
rs12000194	0.82[EUR][1000 genomes]
rs12000403	0.82[EUR][1000 genomes]
rs12000745	0.91[EUR][1000 genomes]
rs12000936	0.85[EUR][1000 genomes]
rs12002016	0.85[EUR][1000 genomes]
rs12002242	0.85[EUR][1000 genomes]
rs12002247	0.91[EUR][1000 genomes]
rs12002844	0.85[EUR][1000 genomes]
rs12002995	0.85[EUR][1000 genomes]
rs12003566	0.82[EUR][1000 genomes]
rs12004175	0.82[EUR][1000 genomes]
rs12005788	0.91[EUR][1000 genomes]
rs12005943	0.85[EUR][1000 genomes]
rs12005959	0.85[EUR][1000 genomes]
rs16910907	0.82[EUR][1000 genomes]
rs28581753	0.91[EUR][1000 genomes]
rs59452957	0.82[EUR][1000 genomes]
rs60097289	0.82[EUR][1000 genomes]
rs7043002	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv973456	chr9:26805892-26810507	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26808400-26810800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:26809400-26811000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:26809600-26811000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:26810200-26811200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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