Variant report

Variant	rs16911462
Chromosome Location	chr9:116756205-116756206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116753360..116755709-chr9:116755784..116758340,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10156515	1.00[EUR][1000 genomes]
rs12341405	1.00[EUR][1000 genomes]
rs16909502	1.00[EUR][1000 genomes]
rs7041372	1.00[EUR][1000 genomes]
rs73658319	1.00[EUR][1000 genomes]
rs7852282	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116721200-116756400	Weak transcription	NHEK	skin
2	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:116732600-116762600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
6	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:116746400-116756600	Strong transcription	Fetal Intestine Small	intestine
9	chr9:116749000-116756800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:116749400-116756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:116749800-116759200	Enhancers	Liver	Liver
12	chr9:116750000-116756800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:116750200-116756800	Enhancers	HSMMtube	muscle
14	chr9:116751000-116773400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:116752000-116764600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:116752200-116760000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:116752200-116764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:116752400-116757000	Enhancers	Lung	lung
19	chr9:116752400-116762000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr9:116752800-116757200	Enhancers	Stomach Mucosa	stomach
21	chr9:116752800-116762600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:116753000-116756400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:116753000-116756400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:116753000-116756600	Enhancers	Spleen	Spleen
25	chr9:116753200-116756400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:116753400-116757000	Enhancers	Left Ventricle	heart
27	chr9:116753400-116757000	Enhancers	Right Atrium	heart
28	chr9:116753400-116758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:116753400-116758800	Weak transcription	Fetal Intestine Large	intestine
30	chr9:116753600-116756800	Enhancers	Ovary	ovary
31	chr9:116753600-116757000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr9:116753600-116757000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr9:116753600-116757200	Enhancers	Fetal Muscle Leg	muscle
34	chr9:116753600-116764000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:116753600-116764000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:116753600-116764600	Weak transcription	A549	lung
37	chr9:116753800-116756800	Enhancers	Fetal Muscle Trunk	muscle
38	chr9:116753800-116757000	Enhancers	Pancreas	Pancrea
39	chr9:116754000-116756800	Enhancers	Duodenum Mucosa	Duodenum
40	chr9:116754000-116756800	Enhancers	Fetal Thymus	thymus
41	chr9:116754000-116757000	Enhancers	Fetal Lung	lung
42	chr9:116754200-116756600	Enhancers	Primary hematopoietic stem cells	blood
43	chr9:116754200-116757000	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr9:116754200-116757000	Enhancers	Primary B cells from peripheral blood	blood
45	chr9:116754200-116757000	Enhancers	Right Ventricle	heart
46	chr9:116754200-116759600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr9:116754200-116762200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:116754400-116756800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:116754400-116756800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:116754400-116757000	Enhancers	Cortex derived primary cultured neurospheres	brain

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