Variant report

Variant	rs16911753
Chromosome Location	chr9:116787547-116787548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10116543	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10118282	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982036	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10982037	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10982039	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs10982044	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10982046	0.84[EUR][1000 genomes]
rs12378906	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12380714	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12555049	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1359171	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359172	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41277651	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7846976	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7853168	0.81[YRI][hapmap]
rs7856141	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7869264	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116764600-116797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:116766000-116792600	Weak transcription	Stomach Mucosa	stomach
4	chr9:116766000-116798000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:116766200-116799000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:116766600-116811200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:116768400-116794600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:116769400-116790400	Weak transcription	Right Ventricle	heart
9	chr9:116773600-116809200	Weak transcription	Fetal Heart	heart
10	chr9:116774000-116791200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:116774000-116791200	Weak transcription	Fetal Brain Male	brain
12	chr9:116774200-116798400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:116774600-116790400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:116776200-116789800	Strong transcription	HUVEC	blood vessel
15	chr9:116780200-116798600	Weak transcription	Colonic Mucosa	Colon
16	chr9:116780600-116796800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:116780800-116788000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:116780800-116788000	Weak transcription	Spleen	Spleen
19	chr9:116780800-116791000	Weak transcription	Gastric	stomach
20	chr9:116780800-116791000	Weak transcription	Pancreas	Pancrea
21	chr9:116780800-116791200	Weak transcription	Thymus	Thymus
22	chr9:116780800-116792800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:116780800-116796800	Weak transcription	Brain Angular Gyrus	brain
24	chr9:116780800-116798000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:116780800-116800200	Weak transcription	Esophagus	oesophagus
26	chr9:116781000-116787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:116781000-116790800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:116781000-116790800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:116781000-116797600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr9:116781200-116788000	Weak transcription	Aorta	Aorta
31	chr9:116781400-116789200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:116781400-116790600	Weak transcription	Lung	lung
33	chr9:116784000-116798000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr9:116785200-116788400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr9:116785200-116796000	Weak transcription	NHDF-Ad	bronchial
36	chr9:116785200-116811200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:116785400-116790200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:116785400-116790800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:116785400-116798200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:116785400-116799000	Weak transcription	Brain Substantia Nigra	brain
41	chr9:116785400-116810600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr9:116785800-116790600	Weak transcription	Liver	Liver
43	chr9:116785800-116791200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr9:116785800-116798000	Weak transcription	NH-A	brain
45	chr9:116785800-116798400	Weak transcription	Colon Smooth Muscle	Colon
46	chr9:116786000-116792400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr9:116786400-116791200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr9:116786400-116791400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr9:116786400-116796800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr9:116786400-116798800	Weak transcription	Monocytes-CD14+_RO01746	blood

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