Variant report

Variant	rs7846976
Chromosome Location	chr9:116786422-116786423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr9:116786276-116786599	K562	blood:	n/a	n/a
2	RCOR1	chr9:116786149-116786700	IMR90	lung:	n/a	n/a
3	KAP1	chr9:116785963-116786756	K562	blood:	n/a	n/a
4	CBX3	chr9:116786258-116786603	K562	blood:	n/a	n/a
5	SETDB1	chr9:116785861-116786648	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ZNF618	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10114580	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10116543	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10118282	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982036	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10982037	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10982039	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10982044	0.80[EUR][1000 genomes]
rs10982046	0.84[EUR][1000 genomes]
rs12349112	1.00[CHB][hapmap]
rs12378906	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12380714	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12555049	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1359171	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1359172	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1576467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16911662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16911753	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41277651	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57659453	0.88[ASN][1000 genomes]
rs60351204	0.92[ASN][1000 genomes]
rs7849443	0.88[ASN][1000 genomes]
rs7856141	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs7863003	1.00[ASN][1000 genomes]
rs7869264	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116764600-116797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:116766000-116792600	Weak transcription	Stomach Mucosa	stomach
4	chr9:116766000-116798000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:116766200-116799000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:116766600-116811200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:116768400-116794600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:116769400-116790400	Weak transcription	Right Ventricle	heart
9	chr9:116773600-116809200	Weak transcription	Fetal Heart	heart
10	chr9:116774000-116791200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:116774000-116791200	Weak transcription	Fetal Brain Male	brain
12	chr9:116774200-116798400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:116774600-116790400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:116776200-116789800	Strong transcription	HUVEC	blood vessel
15	chr9:116780200-116798600	Weak transcription	Colonic Mucosa	Colon
16	chr9:116780600-116796800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:116780800-116786800	Weak transcription	Left Ventricle	heart
18	chr9:116780800-116788000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:116780800-116788000	Weak transcription	Spleen	Spleen
20	chr9:116780800-116791000	Weak transcription	Gastric	stomach
21	chr9:116780800-116791000	Weak transcription	Pancreas	Pancrea
22	chr9:116780800-116791200	Weak transcription	Thymus	Thymus
23	chr9:116780800-116792800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:116780800-116796800	Weak transcription	Brain Angular Gyrus	brain
25	chr9:116780800-116798000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:116780800-116800200	Weak transcription	Esophagus	oesophagus
27	chr9:116781000-116786800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:116781000-116787200	Weak transcription	NHLF	lung
29	chr9:116781000-116787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:116781000-116790800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:116781000-116790800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:116781000-116797600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr9:116781200-116788000	Weak transcription	Aorta	Aorta
34	chr9:116781400-116786600	Weak transcription	Fetal Intestine Small	intestine
35	chr9:116781400-116786800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:116781400-116789200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr9:116781400-116790600	Weak transcription	Lung	lung
38	chr9:116781600-116787200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:116781800-116786800	Weak transcription	Fetal Stomach	stomach
40	chr9:116782400-116786800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:116783000-116787000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr9:116784000-116786800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
43	chr9:116784000-116787000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:116784000-116787000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:116784000-116787400	ZNF genes & repeats	A549	lung
46	chr9:116784000-116798000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr9:116784400-116787000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:116784400-116787400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:116784600-116787200	Weak transcription	Ovary	ovary
50	chr9:116785000-116786600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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