Variant report

Variant	rs1576467
Chromosome Location	chr9:116757470-116757471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116753360..116755709-chr9:116755784..116758340,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10114580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10120772	0.86[CEU][hapmap];0.87[TSI][hapmap]
rs10435837	0.86[CEU][hapmap]
rs10435838	0.86[CEU][hapmap]
rs10982023	0.86[CEU][hapmap];0.81[TSI][hapmap]
rs10982024	0.86[CEU][hapmap];0.93[TSI][hapmap]
rs10982039	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12349112	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs16911662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1830774	0.86[CEU][hapmap];0.93[TSI][hapmap]
rs2026141	0.86[CEU][hapmap]
rs4979313	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57659453	0.91[ASN][1000 genomes]
rs60351204	0.87[ASN][1000 genomes]
rs700125	0.86[CEU][hapmap]
rs7019628	0.86[CEU][hapmap]
rs7846976	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7849443	0.91[ASN][1000 genomes]
rs7853168	0.82[CEU][hapmap]
rs7863003	0.80[ASN][1000 genomes]
rs814702	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs942288	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:116732600-116762600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
5	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:116749800-116759200	Enhancers	Liver	Liver
8	chr9:116751000-116773400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:116752000-116764600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:116752200-116760000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:116752200-116764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:116752400-116762000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:116752800-116762600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:116753400-116758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:116753400-116758800	Weak transcription	Fetal Intestine Large	intestine
16	chr9:116753600-116764000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:116753600-116764000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:116753600-116764600	Weak transcription	A549	lung
19	chr9:116754200-116759600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:116754200-116762200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:116754400-116757600	Enhancers	Brain Germinal Matrix	brain
22	chr9:116754400-116758600	Enhancers	Fetal Heart	heart
23	chr9:116754400-116760000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:116754600-116758200	Enhancers	Fetal Brain Female	brain
25	chr9:116755200-116759600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:116755400-116768000	Weak transcription	HSMM	muscle
27	chr9:116755600-116758800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:116756200-116773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr9:116756400-116775600	Weak transcription	Primary B cells from cord blood	blood
30	chr9:116756600-116758200	Enhancers	Fetal Brain Male	brain
31	chr9:116756600-116758200	Weak transcription	Fetal Intestine Small	intestine
32	chr9:116756600-116758400	Weak transcription	Spleen	Spleen
33	chr9:116756600-116759000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:116756600-116762000	Weak transcription	NHDF-Ad	bronchial
35	chr9:116756600-116764200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:116756600-116765600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:116756600-116766400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr9:116756800-116757600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:116756800-116758000	Weak transcription	HSMMtube	muscle
40	chr9:116756800-116758200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr9:116756800-116758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:116756800-116760000	Weak transcription	Ovary	ovary
43	chr9:116756800-116760800	Weak transcription	Gastric	stomach
44	chr9:116756800-116761800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr9:116756800-116762000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:116756800-116762800	Weak transcription	NHEK	skin
47	chr9:116756800-116765000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr9:116756800-116765200	Weak transcription	NH-A	brain
49	chr9:116756800-116765400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr9:116756800-116768000	Weak transcription	Thymus	Thymus

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