Variant report

Variant	rs7849443
Chromosome Location	chr9:116764562-116764563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116495741..116497533-chr9:116762322..116765289,2	MCF-7	breast:
2	chr9:116759941..116761511-chr9:116761925..116764666,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10114580	0.82[ASN][1000 genomes]
rs10982039	1.00[ASN][1000 genomes]
rs12349112	0.82[ASN][1000 genomes]
rs1576467	0.91[ASN][1000 genomes]
rs16911662	1.00[ASN][1000 genomes]
rs57659453	1.00[ASN][1000 genomes]
rs60351204	0.96[ASN][1000 genomes]
rs7846976	0.88[ASN][1000 genomes]
rs7863003	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116732200-116768800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:116732200-116773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:116733000-116768600	Weak transcription	Fetal Kidney	kidney
4	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:116736400-116783000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:116751000-116773400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:116752000-116764600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:116753600-116764600	Weak transcription	A549	lung
9	chr9:116755400-116768000	Weak transcription	HSMM	muscle
10	chr9:116756200-116773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:116756400-116775600	Weak transcription	Primary B cells from cord blood	blood
12	chr9:116756600-116765600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:116756600-116766400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:116756800-116765000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:116756800-116765200	Weak transcription	NH-A	brain
16	chr9:116756800-116765400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:116756800-116768000	Weak transcription	Thymus	Thymus
18	chr9:116756800-116768800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:116756800-116779000	Weak transcription	Esophagus	oesophagus
20	chr9:116756800-116783800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:116757000-116765000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:116757000-116765000	Weak transcription	Left Ventricle	heart
23	chr9:116757000-116765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:116757000-116765400	Weak transcription	Brain Substantia Nigra	brain
25	chr9:116757000-116765600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:116757000-116766000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:116757000-116766200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr9:116757000-116770200	Weak transcription	Aorta	Aorta
29	chr9:116757000-116773600	Weak transcription	HMEC	breast
30	chr9:116757000-116779600	Weak transcription	Colon Smooth Muscle	Colon
31	chr9:116757000-116779800	Weak transcription	Colonic Mucosa	Colon
32	chr9:116757000-116783400	Weak transcription	Small Intestine	intestine
33	chr9:116757600-116772200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr9:116758000-116765600	Strong transcription	Fetal Stomach	stomach
35	chr9:116758200-116767400	Strong transcription	Fetal Intestine Small	intestine
36	chr9:116758400-116775000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:116759600-116765600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:116760000-116765600	Weak transcription	Fetal Brain Female	brain
39	chr9:116760000-116773400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:116760800-116765400	Strong transcription	Adipose Nuclei	Adipose
41	chr9:116760800-116765600	Weak transcription	Right Atrium	heart
42	chr9:116760800-116771600	Strong transcription	NHLF	lung
43	chr9:116761200-116765400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:116762000-116765800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr9:116762000-116766000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:116762200-116766000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:116762200-116766400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:116762200-116766600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:116762200-116770800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:116762200-116772800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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