Variant report

Variant	rs16911988
Chromosome Location	chr9:97932909-97932910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97910896..97912573-chr9:97931774..97933333,2	K562	blood:
2	chr9:97928874..97931668-chr9:97931897..97933841,2	K562	blood:

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16912089	1.00[AMR][1000 genomes]
rs1800362	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1889242	1.00[AMR][1000 genomes]
rs1889243	1.00[AMR][1000 genomes]
rs4647396	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4647399	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4647506	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56037123	1.00[AMR][1000 genomes]
rs56140833	1.00[AMR][1000 genomes]
rs7040594	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7048641	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97893800-97940400	Weak transcription	Pancreas	Pancrea
2	chr9:97906400-97933000	Weak transcription	Fetal Kidney	kidney
3	chr9:97906600-97950200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:97910800-97933000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:97920000-97952000	Weak transcription	Aorta	Aorta
6	chr9:97920000-97952000	Weak transcription	Esophagus	oesophagus
7	chr9:97920400-97951800	Weak transcription	HepG2	liver
8	chr9:97920600-97933000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:97920600-97933400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:97925800-97938000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:97925800-97944800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:97926000-97937800	Weak transcription	Psoas Muscle	Psoas
13	chr9:97926400-97934400	Weak transcription	Primary B cells from cord blood	blood
14	chr9:97926800-97933200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:97927600-97950400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:97928600-97933200	Weak transcription	NHEK	skin
17	chr9:97930000-97945200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr9:97930000-97945400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:97930600-97933000	Weak transcription	Fetal Stomach	stomach
20	chr9:97930600-97933000	Weak transcription	A549	lung
21	chr9:97930600-97933200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr9:97930600-97939400	Weak transcription	Fetal Muscle Leg	muscle
23	chr9:97930600-97943400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:97930600-97944800	Weak transcription	Lung	lung
25	chr9:97930600-97950400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:97930600-97950800	Weak transcription	Thymus	Thymus
27	chr9:97930600-97952000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:97930800-97933000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:97930800-97933000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr9:97930800-97933000	Weak transcription	NH-A	brain
31	chr9:97930800-97933200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:97930800-97933200	Weak transcription	Osteobl	bone
33	chr9:97930800-97933600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr9:97930800-97940400	Weak transcription	Fetal Thymus	thymus
35	chr9:97930800-97941600	Weak transcription	Liver	Liver
36	chr9:97930800-97951600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr9:97930800-97952400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:97931000-97933800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr9:97931200-97937800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:97931200-97940000	Weak transcription	Fetal Intestine Small	intestine
41	chr9:97931800-97933200	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr9:97931800-97937800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr9:97932000-97934000	Enhancers	Fetal Heart	heart
44	chr9:97932000-97935000	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr9:97932200-97933200	Weak transcription	K562	blood
46	chr9:97932200-97933800	Weak transcription	Dnd41	blood
47	chr9:97932200-97944800	Weak transcription	Primary T cells from cord blood	blood
48	chr9:97932200-97945000	Weak transcription	Fetal Intestine Large	intestine
49	chr9:97932600-97933000	Weak transcription	Hela-S3	cervix
50	chr9:97932600-97933800	Enhancers	Fetal Lung	lung

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