Variant report

Variant	rs4647399
Chromosome Location	chr9:98048142-98048143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16911988	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16912089	1.00[AMR][1000 genomes]
rs1800362	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1889242	1.00[AMR][1000 genomes]
rs1889243	1.00[AMR][1000 genomes]
rs28441412	1.00[CEU][hapmap]
rs28601668	1.00[CEU][hapmap]
rs4647396	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4647506	1.00[AMR][1000 genomes]
rs56037123	1.00[AMR][1000 genomes]
rs56140833	1.00[AMR][1000 genomes]
rs7040594	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98045400-98048800	Enhancers	Fetal Intestine Large	intestine
2	chr9:98045800-98048800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:98046200-98050200	Enhancers	Liver	Liver
4	chr9:98046600-98048200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:98046600-98048800	Weak transcription	Small Intestine	intestine
6	chr9:98046600-98059400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:98046600-98063000	Weak transcription	Fetal Stomach	stomach
8	chr9:98046800-98048200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:98047000-98048200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:98047000-98048200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:98047000-98048800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:98047200-98048200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:98047200-98048200	Weak transcription	A549	lung
14	chr9:98047200-98048200	Enhancers	NHLF	lung
15	chr9:98047200-98059400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:98047400-98055800	Weak transcription	HepG2	liver
17	chr9:98047800-98048200	Enhancers	Colon Smooth Muscle	Colon
18	chr9:98048000-98048200	Enhancers	Fetal Lung	lung
19	chr9:98048000-98055000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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