Variant report

Variant	rs16912031
Chromosome Location	chr9:97959435-97959436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97935732..97938489-chr9:97958539..97960476,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1800367	0.94[AFR][1000 genomes]
rs28535719	0.83[AFR][1000 genomes]
rs4647492	0.83[AFR][1000 genomes]
rs4647507	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97941000-97959800	Weak transcription	Pancreas	Pancrea
2	chr9:97950800-97959600	Weak transcription	Gastric	stomach
3	chr9:97952200-97960200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:97952600-97963200	Weak transcription	Spleen	Spleen
5	chr9:97952600-97969400	Weak transcription	Fetal Intestine Small	intestine
6	chr9:97953000-97959800	Weak transcription	Right Atrium	heart
7	chr9:97953000-97959800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:97953000-97960000	Weak transcription	Fetal Stomach	stomach
9	chr9:97953000-97961600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:97953000-97961600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:97953600-97959800	Weak transcription	Lung	lung
12	chr9:97954200-97959800	Weak transcription	Ovary	ovary
13	chr9:97956000-97963600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:97958800-97960600	Enhancers	Psoas Muscle	Psoas
15	chr9:97958800-97960800	Enhancers	Fetal Heart	heart
16	chr9:97958800-97961000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:97958800-97968400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:97959000-97959800	Weak transcription	Right Ventricle	heart
19	chr9:97959000-97960600	Enhancers	Left Ventricle	heart
20	chr9:97959000-97961000	Enhancers	HSMMtube	muscle
21	chr9:97959000-97968400	Weak transcription	Fetal Intestine Large	intestine
22	chr9:97959200-97959600	Weak transcription	Aorta	Aorta
23	chr9:97959200-97959600	Weak transcription	Esophagus	oesophagus
24	chr9:97959200-97960000	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:97959200-97961200	Enhancers	HSMM	muscle
26	chr9:97959200-97962000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:97959400-97960600	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr9:97959400-97961000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:97959400-97961200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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