Variant report

Variant	rs4647492
Chromosome Location	chr9:97940080-97940081
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97933951..97937360-chr9:97938863..97941166,3	K562	blood:
2	chr9:97940064..97942185-chr9:97942262..97943911,2	MCF-7	breast:
3	chr9:97934712..97937360-chr9:97939666..97942024,2	K562	blood:

Variant related genes	Relation type
ENSG00000238746	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16912031	0.83[AFR][1000 genomes]
rs2121201	0.81[AFR][1000 genomes]
rs28535719	1.00[AFR][1000 genomes]
rs4647450	0.81[AFR][1000 genomes]
rs4647507	0.83[AFR][1000 genomes]
rs4647548	0.88[AFR][1000 genomes]
rs7032098	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97893800-97940400	Weak transcription	Pancreas	Pancrea
2	chr9:97906600-97950200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:97920000-97952000	Weak transcription	Aorta	Aorta
4	chr9:97920000-97952000	Weak transcription	Esophagus	oesophagus
5	chr9:97920400-97951800	Weak transcription	HepG2	liver
6	chr9:97925800-97944800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr9:97927600-97950400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:97930000-97945200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:97930000-97945400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:97930600-97943400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:97930600-97944800	Weak transcription	Lung	lung
12	chr9:97930600-97950400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:97930600-97950800	Weak transcription	Thymus	Thymus
14	chr9:97930600-97952000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:97930800-97940400	Weak transcription	Fetal Thymus	thymus
16	chr9:97930800-97941600	Weak transcription	Liver	Liver
17	chr9:97930800-97951600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:97930800-97952400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:97932200-97944800	Weak transcription	Primary T cells from cord blood	blood
20	chr9:97932200-97945000	Weak transcription	Fetal Intestine Large	intestine
21	chr9:97933200-97950600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:97933400-97945400	Weak transcription	Fetal Kidney	kidney
23	chr9:97933600-97944200	Weak transcription	Fetal Stomach	stomach
24	chr9:97937600-97941000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr9:97938000-97940600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:97938200-97945200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:97938200-97945200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:97938600-97940600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr9:97939400-97940200	Enhancers	Fetal Lung	lung
30	chr9:97939400-97940800	Enhancers	Fetal Muscle Leg	muscle
31	chr9:97939600-97940400	Weak transcription	Psoas Muscle	Psoas
32	chr9:97939600-97941400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr9:97939600-97950200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:97940000-97941000	Strong transcription	Fetal Intestine Small	intestine
35	chr9:97940000-97941000	Enhancers	Fetal Muscle Trunk	muscle

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