Variant report

Variant	rs16912626
Chromosome Location	chr8:85179898-85179899
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10504792	0.83[EUR][1000 genomes]
rs10504799	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675795	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12680433	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12680668	1.00[ASN][1000 genomes]
rs16912587	0.97[ASN][1000 genomes]
rs16912588	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16912599	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16912601	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16912613	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16912618	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16912624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912630	1.00[ASN][1000 genomes]
rs16912644	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16912699	0.83[EUR][1000 genomes]
rs34979696	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85178000-85180400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:85179600-85180600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:85179600-85181000	Enhancers	Fetal Intestine Large	intestine
4	chr8:85179800-85180200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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