Variant report

Variant	rs34979696
Chromosome Location	chr8:85248462-85248463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10504792	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504799	0.80[EUR][1000 genomes]
rs12675795	0.80[EUR][1000 genomes]
rs12680433	0.80[EUR][1000 genomes]
rs16912624	0.80[EUR][1000 genomes]
rs16912626	0.80[EUR][1000 genomes]
rs16912644	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16912699	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3993398	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1034144	chr8:85230634-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1028025	chr8:85239131-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1836296	chr8:85239703-85267546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1020913	chr8:85240474-85268654	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611647	chr8:85241871-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv611648	chr8:85241871-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1020493	chr8:85246493-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85247200-85248600	Enhancers	Fetal Heart	heart
2	chr8:85247400-85249600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:85247600-85249200	Enhancers	Fetal Brain Male	brain
4	chr8:85247800-85248600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:85248000-85248600	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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