Variant report

Variant	rs16916117
Chromosome Location	chr10:22907475-22907476
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22725288..22727393-chr10:22906827..22908715,2	MCF-7	breast:
2	chr10:22906504..22909168-chr10:22914292..22915841,2	MCF-7	breast:
3	chr10:22898054..22899902-chr10:22906833..22909021,2	K562	blood:
4	chr10:22905924..22908510-chr10:23000876..23002578,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16922490	1.00[AMR][1000 genomes]
rs16922545	1.00[AMR][1000 genomes]
rs7902055	1.00[AMR][1000 genomes]
rs7905631	1.00[AMR][1000 genomes]
rs7914111	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22894800-22913000	Weak transcription	Fetal Kidney	kidney
2	chr10:22898200-22908000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:22899400-22909400	Enhancers	Brain Angular Gyrus	brain
4	chr10:22899800-22909600	Enhancers	Brain Hippocampus Middle	brain
5	chr10:22901400-22909400	Weak transcription	Thymus	Thymus
6	chr10:22901600-22918200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:22901800-22908200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:22901800-22909400	Enhancers	Primary T cells from cord blood	blood
9	chr10:22901800-22913000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:22901800-22918800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:22902000-22908000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:22902000-22908000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:22902400-22907800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:22902400-22921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:22902600-22908200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:22902800-22912400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:22903000-22909200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr10:22903200-22908200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:22903400-22907600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:22903800-22922000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:22904000-22910600	Enhancers	Primary T cells fromperipheralblood	blood
22	chr10:22904000-22913200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:22904600-22907800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:22904600-22907800	Enhancers	Right Atrium	heart
25	chr10:22904600-22908000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr10:22904600-22908400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:22904600-22909000	Enhancers	HUVEC	blood vessel
28	chr10:22904600-22909200	Enhancers	Brain Germinal Matrix	brain
29	chr10:22904800-22907800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr10:22904800-22907800	Enhancers	Psoas Muscle	Psoas
31	chr10:22905000-22908800	Weak transcription	Fetal Brain Female	brain
32	chr10:22905000-22910600	Enhancers	HSMM	muscle
33	chr10:22905000-22912400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr10:22905000-22914400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:22905000-22918600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr10:22905200-22907800	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr10:22905200-22908200	Enhancers	Primary B cells from cord blood	blood
38	chr10:22905200-22908200	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr10:22905200-22908400	Enhancers	Primary B cells from peripheral blood	blood
40	chr10:22905200-22909000	Weak transcription	Fetal Stomach	stomach
41	chr10:22905200-22909200	Enhancers	Hela-S3	cervix
42	chr10:22905200-22909600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:22905200-22909600	Enhancers	Brain Substantia Nigra	brain
44	chr10:22905200-22912800	Weak transcription	Colonic Mucosa	Colon
45	chr10:22905200-22919400	Enhancers	NHDF-Ad	bronchial
46	chr10:22905400-22907800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:22905400-22907800	Enhancers	K562	blood
48	chr10:22905400-22909200	Enhancers	Brain Cingulate Gyrus	brain
49	chr10:22905400-22909200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr10:22905400-22909200	Weak transcription	Pancreas	Pancrea

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