Variant report

Variant	rs7902055
Chromosome Location	chr10:23093925-23093926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23093031..23094566-chr10:23095292..23097801,2	K562	blood:
2	chr10:23090452..23092008-chr10:23092511..23094369,2	K562	blood:
3	chr10:23092682..23094839-chr2:187127661..187130019,2	MCF-7	breast:
4	chr10:23093887..23094416-chr10:23266755..23267519,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16916117	1.00[AMR][1000 genomes]
rs16922545	1.00[AMR][1000 genomes]
rs7080886	1.00[AMR][1000 genomes]
rs7092241	1.00[AMR][1000 genomes]
rs7905631	1.00[AMR][1000 genomes]
rs7914111	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894965	chr10:23071128-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23090800-23094400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:23090800-23095000	Enhancers	NHDF-Ad	bronchial
3	chr10:23091600-23095800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:23091600-23096000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:23091800-23094800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:23091800-23094800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:23091800-23095000	Enhancers	HSMMtube	muscle
8	chr10:23092000-23094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:23092000-23094600	Enhancers	NHLF	lung
10	chr10:23092000-23095800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:23092200-23095400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:23092400-23095000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:23092800-23094600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:23092800-23094600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:23092800-23095400	Enhancers	Brain Substantia Nigra	brain
16	chr10:23093000-23094000	Weak transcription	HSMM	muscle
17	chr10:23093000-23094600	Enhancers	Brain Hippocampus Middle	brain
18	chr10:23093000-23099600	Weak transcription	NH-A	brain
19	chr10:23093000-23105200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:23093200-23094400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:23093600-23094200	Weak transcription	Fetal Brain Male	brain
22	chr10:23093600-23094600	Enhancers	Fetal Lung	lung
23	chr10:23093600-23094800	Enhancers	Osteobl	bone
24	chr10:23093600-23095000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:23093600-23095200	Enhancers	Fetal Intestine Small	intestine
26	chr10:23093600-23095600	Enhancers	Fetal Stomach	stomach
27	chr10:23093800-23094000	Active TSS	Brain Angular Gyrus	brain
28	chr10:23093800-23094000	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr10:23093800-23094200	Enhancers	Stomach Smooth Muscle	stomach
30	chr10:23093800-23094600	Enhancers	Brain Anterior Caudate	brain
31	chr10:23093800-23094600	Enhancers	Small Intestine	intestine
32	chr10:23093800-23095000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:23093800-23095000	Enhancers	Brain Germinal Matrix	brain
34	chr10:23093800-23095000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr10:23093800-23095000	Enhancers	Fetal Brain Female	brain
36	chr10:23093800-23095000	Enhancers	Fetal Heart	heart
37	chr10:23093800-23096400	Enhancers	Colon Smooth Muscle	Colon

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