Variant report

Variant	rs16916962
Chromosome Location	chr10:18491528-18491529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16916950	0.84[YRI][hapmap]
rs58983166	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:18486600-18491600	Weak transcription	Aorta	Aorta
4	chr10:18486600-18491800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:18486600-18492200	Weak transcription	Fetal Intestine Large	intestine
6	chr10:18486800-18492000	Weak transcription	Left Ventricle	heart
7	chr10:18486800-18502000	Weak transcription	Fetal Stomach	stomach
8	chr10:18490600-18494200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:18491000-18492000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:18491000-18493200	Enhancers	Fetal Heart	heart
11	chr10:18491000-18494800	Enhancers	Rectal Smooth Muscle	rectum
12	chr10:18491200-18491600	Enhancers	Stomach Smooth Muscle	stomach
13	chr10:18491200-18491800	Enhancers	Colon Smooth Muscle	Colon
14	chr10:18491200-18492600	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:18491200-18493000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:18491200-18493800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:18491200-18494400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:18491400-18491600	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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