Variant report

Variant	rs16917197
Chromosome Location	chr10:18649694-18649695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11013834	0.81[AMR][1000 genomes]
rs1325992	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs16917194	0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57494713	0.86[AFR][1000 genomes]
rs61839209	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18652200	Weak transcription	Right Atrium	heart
2	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
3	chr10:18639800-18650600	Weak transcription	Pancreas	Pancrea
4	chr10:18639800-18651600	Weak transcription	Ovary	ovary
5	chr10:18646800-18650000	Enhancers	Fetal Heart	heart
6	chr10:18647400-18651600	Weak transcription	Left Ventricle	heart
7	chr10:18648200-18650000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:18649200-18649800	Enhancers	Fetal Intestine Large	intestine
9	chr10:18649200-18649800	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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