Variant report

Variant	rs61839209
Chromosome Location	chr10:18645086-18645087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16917194	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16917197	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18652200	Weak transcription	Right Atrium	heart
2	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
3	chr10:18639800-18650600	Weak transcription	Pancreas	Pancrea
4	chr10:18639800-18651600	Weak transcription	Ovary	ovary
5	chr10:18640400-18647600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:18643600-18647000	Weak transcription	Left Ventricle	heart
7	chr10:18644200-18646800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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