Variant report

Variant	rs16917273
Chromosome Location	chr10:18690699-18690700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11813115	1.00[EUR][1000 genomes]
rs11816303	1.00[EUR][1000 genomes]
rs12249308	1.00[EUR][1000 genomes]
rs12254220	1.00[EUR][1000 genomes]
rs12255804	1.00[EUR][1000 genomes]
rs12259289	1.00[EUR][1000 genomes]
rs12263690	1.00[EUR][1000 genomes]
rs12763280	0.88[YRI][hapmap]
rs16917372	1.00[EUR][1000 genomes]
rs16917384	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16917390	1.00[EUR][1000 genomes]
rs16917402	1.00[MEX][hapmap]
rs28634507	1.00[EUR][1000 genomes]
rs28654370	1.00[EUR][1000 genomes]
rs7088518	1.00[EUR][1000 genomes]
rs73605723	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18688800-18691800	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr10:18689000-18691000	Active TSS	Brain Angular Gyrus	brain
3	chr10:18689000-18691000	Active TSS	Brain Cingulate Gyrus	brain
4	chr10:18689000-18691000	Active TSS	Rectal Smooth Muscle	rectum
5	chr10:18689000-18691200	Active TSS	Colonic Mucosa	Colon
6	chr10:18689000-18691800	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr10:18689000-18692600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr10:18689200-18691600	Weak transcription	Small Intestine	intestine
9	chr10:18689200-18692400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:18689200-18692800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
11	chr10:18689400-18691000	Active TSS	Duodenum Mucosa	Duodenum
12	chr10:18689600-18690800	Flanking Active TSS	Liver	Liver
13	chr10:18689800-18691000	Enhancers	Fetal Brain Male	brain
14	chr10:18690000-18690800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:18690000-18691000	Flanking Active TSS	Fetal Heart	heart
16	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
17	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
18	chr10:18690200-18690800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr10:18690200-18692000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:18690200-18695800	Weak transcription	Right Ventricle	heart
21	chr10:18690200-18698000	Weak transcription	Left Ventricle	heart
22	chr10:18690200-18713000	Weak transcription	Ovary	ovary
23	chr10:18690400-18690800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:18690400-18690800	Enhancers	Fetal Intestine Small	intestine
25	chr10:18690400-18690800	Weak transcription	Pancreas	Pancrea
26	chr10:18690400-18691000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr10:18690600-18690800	Weak transcription	Fetal Intestine Large	intestine
28	chr10:18690600-18691000	Enhancers	Thymus	Thymus
29	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links