Variant report

Variant	rs12763280
Chromosome Location	chr10:18694911-18694912
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12247217	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12267833	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12780039	0.88[CEU][hapmap]
rs12780808	0.96[EUR][1000 genomes]
rs12783774	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs16917273	0.88[YRI][hapmap]
rs16917298	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16917330	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2182346	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34195643	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34740546	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36095580	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67008723	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074324	0.94[EUR][1000 genomes]
rs7075571	1.00[CEU][hapmap]
rs7079457	0.83[EUR][1000 genomes]
rs7083121	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
2	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
3	chr10:18690200-18695800	Weak transcription	Right Ventricle	heart
4	chr10:18690200-18698000	Weak transcription	Left Ventricle	heart
5	chr10:18690200-18713000	Weak transcription	Ovary	ovary
6	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:18691000-18698600	Weak transcription	Fetal Intestine Large	intestine
8	chr10:18691000-18702600	Weak transcription	Pancreas	Pancrea
9	chr10:18691800-18695000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:18692000-18702600	Weak transcription	Liver	Liver
11	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:18692600-18702800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
15	chr10:18692800-18695000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:18693400-18696800	Enhancers	Fetal Heart	heart
17	chr10:18694000-18695400	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr10:18694800-18695400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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