Variant report

Variant	rs34195643
Chromosome Location	chr10:18720109-18720110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12247217	0.94[EUR][1000 genomes]
rs12267833	0.94[EUR][1000 genomes]
rs12763280	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12780808	0.92[EUR][1000 genomes]
rs12783774	0.96[EUR][1000 genomes]
rs16917298	0.94[EUR][1000 genomes]
rs16917330	0.96[EUR][1000 genomes]
rs2182346	0.99[EUR][1000 genomes]
rs34740546	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36095580	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67008723	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7074324	0.97[EUR][1000 genomes]
rs7079457	0.82[EUR][1000 genomes]
rs7083121	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18713400-18721400	Weak transcription	Left Ventricle	heart
3	chr10:18713400-18727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:18714600-18721000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:18718400-18721400	Weak transcription	Fetal Heart	heart
6	chr10:18719000-18730000	Weak transcription	Aorta	Aorta
7	chr10:18720000-18720400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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