Variant report

Variant	rs12267833
Chromosome Location	chr10:18700219-18700220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12247217	0.86[CEU][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12763280	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12780808	0.94[EUR][1000 genomes]
rs12783774	0.92[EUR][1000 genomes]
rs16917298	0.86[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs16917330	0.86[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs2182346	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34195643	0.94[EUR][1000 genomes]
rs34740546	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36095580	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67008723	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7074324	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7075571	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7079457	0.87[EUR][1000 genomes]
rs7083121	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690000-18703600	Weak transcription	Fetal Stomach	stomach
2	chr10:18690000-18705600	Weak transcription	Aorta	Aorta
3	chr10:18690200-18713000	Weak transcription	Ovary	ovary
4	chr10:18690600-18702800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18691000-18702600	Weak transcription	Pancreas	Pancrea
6	chr10:18692000-18702600	Weak transcription	Liver	Liver
7	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:18692400-18703000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:18692600-18702800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:18692600-18707600	Weak transcription	Brain Angular Gyrus	brain
11	chr10:18696400-18702800	Weak transcription	Right Ventricle	heart
12	chr10:18699000-18700600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:18699000-18703000	Weak transcription	Fetal Intestine Large	intestine
14	chr10:18699200-18700400	Weak transcription	Left Ventricle	heart
15	chr10:18699200-18700400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:18699400-18701000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr10:18700000-18703600	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links