Variant report

Variant	rs16917330
Chromosome Location	chr10:18711046-18711047
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12247217	1.00[CEU][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs12267833	0.86[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs12763280	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12765367	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs12780039	0.92[CEU][hapmap]
rs12780808	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12783774	0.92[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16917298	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2182346	0.97[EUR][1000 genomes]
rs34195643	0.96[EUR][1000 genomes]
rs34740546	0.93[EUR][1000 genomes]
rs36095580	0.92[EUR][1000 genomes]
rs67008723	0.92[EUR][1000 genomes]
rs7074324	0.96[EUR][1000 genomes]
rs7075571	1.00[CEU][hapmap]
rs7079457	0.81[EUR][1000 genomes]
rs7083121	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18690200-18713000	Weak transcription	Ovary	ovary
2	chr10:18692000-18712600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:18703200-18711200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
5	chr10:18707800-18713000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:18707800-18713000	Weak transcription	Left Ventricle	heart
7	chr10:18708000-18713000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:18708000-18713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:18708200-18712200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:18710400-18711600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:18710800-18715200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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