Variant report

Variant	rs7083121
Chromosome Location	chr10:18713130-18713131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12247217	0.87[EUR][1000 genomes]
rs12267833	0.87[EUR][1000 genomes]
rs12763280	0.87[EUR][1000 genomes]
rs12780808	0.86[EUR][1000 genomes]
rs12783774	0.89[EUR][1000 genomes]
rs16917298	0.87[EUR][1000 genomes]
rs16917330	0.89[EUR][1000 genomes]
rs2182346	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34195643	0.90[EUR][1000 genomes]
rs34740546	0.88[EUR][1000 genomes]
rs36095580	0.87[EUR][1000 genomes]
rs67008723	0.87[EUR][1000 genomes]
rs7074324	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7075571	0.82[EUR][1000 genomes]
rs982003	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1053675	chr10:18703895-18722912	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18708000-18713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:18710800-18715200	Enhancers	Fetal Heart	heart
4	chr10:18711400-18713400	Enhancers	Placenta	Placenta
5	chr10:18712200-18713200	Enhancers	Stomach Smooth Muscle	stomach
6	chr10:18712200-18713400	Enhancers	Right Ventricle	heart
7	chr10:18712200-18713600	Enhancers	Brain Anterior Caudate	brain
8	chr10:18712600-18713600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:18712800-18714600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:18713000-18713200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr10:18713000-18713400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:18713000-18713400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:18713000-18713400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:18713000-18713400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:18713000-18713400	Enhancers	Left Ventricle	heart
16	chr10:18713000-18713400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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