Variant report

Variant	rs12780039
Chromosome Location	chr10:18678987-18678988
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11013849	0.83[GIH][hapmap]
rs11013850	0.83[GIH][hapmap]
rs11013910	0.83[GIH][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes]
rs12247217	0.92[CEU][hapmap]
rs12763280	0.88[CEU][hapmap]
rs12780808	0.80[EUR][1000 genomes]
rs12783774	0.92[CEU][hapmap]
rs16917298	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs16917330	0.92[CEU][hapmap]
rs17610159	0.83[GIH][hapmap]
rs2031571	0.80[EUR][1000 genomes]
rs4748457	0.83[GIH][hapmap]
rs7075571	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv550041	chr10:18671921-18686452	Enhancers Weak transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
2	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:18669000-18689400	Weak transcription	Left Ventricle	heart
5	chr10:18676400-18679000	Weak transcription	Right Ventricle	heart
6	chr10:18676400-18679600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:18676400-18682600	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:18678000-18679400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:18678200-18681000	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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