Variant report

Variant	rs2031571
Chromosome Location	chr10:18667473-18667474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11013849	0.81[EUR][1000 genomes]
rs11013850	0.81[EUR][1000 genomes]
rs11013910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240995	0.85[EUR][1000 genomes]
rs12780039	0.80[EUR][1000 genomes]
rs17683651	0.83[EUR][1000 genomes]
rs4748456	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
2	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
3	chr10:18665800-18668200	Weak transcription	Right Atrium	heart
4	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:18667000-18667600	Weak transcription	Liver	Liver
6	chr10:18667000-18669600	Weak transcription	Fetal Heart	heart
7	chr10:18667400-18667600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:18667400-18667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:18667400-18667800	Enhancers	Aorta	Aorta
10	chr10:18667400-18667800	Enhancers	Ovary	ovary
11	chr10:18667400-18669000	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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