Variant report

Variant	rs12240995
Chromosome Location	chr10:18637232-18637233
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11013615	1.00[JPT][hapmap]
rs11013640	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11013723	0.85[ASN][1000 genomes]
rs11013845	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs11013849	0.86[CEU][hapmap]
rs11013850	0.86[CEU][hapmap]
rs11013910	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs17610062	0.85[CEU][hapmap]
rs17610248	0.81[EUR][1000 genomes]
rs17683651	0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2031571	0.85[EUR][1000 genomes]
rs2357929	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4146986	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4748456	0.86[EUR][1000 genomes]
rs56177813	0.83[EUR][1000 genomes]
rs56346389	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18630000-18639200	Weak transcription	Pancreas	Pancrea
2	chr10:18630200-18639200	Weak transcription	Ovary	ovary
3	chr10:18634800-18640200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:18635000-18639200	Weak transcription	Right Ventricle	heart
5	chr10:18635600-18639200	Weak transcription	Left Ventricle	heart
6	chr10:18635800-18640600	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links