Variant report

Variant	rs2357929
Chromosome Location	chr10:18643581-18643582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11013615	1.00[JPT][hapmap]
rs11013640	1.00[JPT][hapmap]
rs11013723	0.85[ASN][1000 genomes]
rs11013845	1.00[CHD][hapmap]
rs12240995	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17610159	0.85[CEU][hapmap]
rs17610248	0.81[EUR][1000 genomes]
rs17682889	1.00[LWK][hapmap]
rs17683651	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4146986	1.00[JPT][hapmap]
rs4748456	0.83[EUR][1000 genomes]
rs56177813	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2357929	C10orf111	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18652200	Weak transcription	Right Atrium	heart
2	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
3	chr10:18639800-18650600	Weak transcription	Pancreas	Pancrea
4	chr10:18639800-18651600	Weak transcription	Ovary	ovary
5	chr10:18640400-18647600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:18641000-18644200	Enhancers	Fetal Heart	heart
7	chr10:18642400-18643800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:18643400-18643600	Genic enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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