Variant report

Variant	rs17683651
Chromosome Location	chr10:18640306-18640307
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11013615	1.00[JPT][hapmap]
rs11013640	1.00[JPT][hapmap]
rs11013845	1.00[CHD][hapmap]
rs11013910	0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs12240995	0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17610159	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs17610248	0.88[EUR][1000 genomes]
rs17682889	1.00[LWK][hapmap]
rs2031571	0.83[EUR][1000 genomes]
rs2357929	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4146986	1.00[JPT][hapmap]
rs4748456	0.92[EUR][1000 genomes]
rs56177813	0.90[EUR][1000 genomes]
rs56346389	0.83[EUR][1000 genomes]
rs56346888	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18635800-18640600	Enhancers	Fetal Heart	heart
2	chr10:18638200-18641000	Weak transcription	Fetal Brain Male	brain
3	chr10:18638400-18640600	Enhancers	Fetal Brain Female	brain
4	chr10:18638400-18642400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:18639200-18640400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:18639200-18640600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:18639400-18641600	Enhancers	Primary B cells from cord blood	blood
8	chr10:18639600-18640800	Weak transcription	Right Ventricle	heart
9	chr10:18639600-18643200	Weak transcription	Left Ventricle	heart
10	chr10:18639600-18652200	Weak transcription	Right Atrium	heart
11	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
12	chr10:18639800-18650600	Weak transcription	Pancreas	Pancrea
13	chr10:18639800-18651600	Weak transcription	Ovary	ovary
14	chr10:18640200-18641000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:18640200-18641800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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