Variant report

Variant	rs16918875
Chromosome Location	chr8:54142154-54142155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10504151	0.82[CEU][hapmap]
rs12056411	0.82[CEU][hapmap]
rs12056414	0.82[CEU][hapmap]
rs16918832	1.00[EUR][1000 genomes]
rs16918900	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16918928	0.82[CEU][hapmap]
rs16918931	0.82[CEU][hapmap]
rs16918934	0.82[CEU][hapmap]
rs16918938	0.82[CEU][hapmap]
rs16918955	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2303432	0.82[CEU][hapmap]
rs2303433	0.82[CEU][hapmap]
rs34418807	1.00[EUR][1000 genomes]
rs57537478	1.00[EUR][1000 genomes]
rs57796760	1.00[EUR][1000 genomes]
rs58121794	1.00[EUR][1000 genomes]
rs58534275	1.00[EUR][1000 genomes]
rs58861077	1.00[EUR][1000 genomes]
rs60521056	1.00[EUR][1000 genomes]
rs60721705	1.00[EUR][1000 genomes]
rs61410012	1.00[EUR][1000 genomes]
rs6982096	0.82[CEU][hapmap]
rs6986052	0.82[CEU][hapmap]
rs6988508	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6996658	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016275	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73585649	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73585658	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73589347	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73589385	1.00[EUR][1000 genomes]
rs73601364	1.00[EUR][1000 genomes]
rs73601368	1.00[EUR][1000 genomes]
rs73602836	1.00[EUR][1000 genomes]
rs73602840	1.00[EUR][1000 genomes]
rs73602841	1.00[EUR][1000 genomes]
rs73602844	1.00[EUR][1000 genomes]
rs73602860	1.00[EUR][1000 genomes]
rs73679682	1.00[EUR][1000 genomes]
rs7813478	0.82[CEU][hapmap]
rs7816233	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7822011	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7822111	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7829470	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7832039	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7839445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840304	0.82[CEU][hapmap]
rs7843965	0.82[CEU][hapmap]
rs7844117	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54132000-54149400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:54137200-54148800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:54140800-54143800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:54141600-54142200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:54142000-54142200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:54142000-54142800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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