Variant report

Variant	rs73679682
Chromosome Location	chr8:54136481-54136482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16918832	1.00[EUR][1000 genomes]
rs16918875	1.00[EUR][1000 genomes]
rs16918900	1.00[EUR][1000 genomes]
rs16918955	1.00[EUR][1000 genomes]
rs34418807	1.00[EUR][1000 genomes]
rs57537478	1.00[EUR][1000 genomes]
rs57796760	1.00[EUR][1000 genomes]
rs58121794	1.00[EUR][1000 genomes]
rs58534275	1.00[EUR][1000 genomes]
rs58861077	1.00[EUR][1000 genomes]
rs60521056	1.00[EUR][1000 genomes]
rs60721705	1.00[EUR][1000 genomes]
rs61410012	1.00[EUR][1000 genomes]
rs6988508	1.00[EUR][1000 genomes]
rs6996658	1.00[EUR][1000 genomes]
rs7016275	1.00[EUR][1000 genomes]
rs73585649	1.00[EUR][1000 genomes]
rs73585658	1.00[EUR][1000 genomes]
rs73589347	1.00[EUR][1000 genomes]
rs73589385	1.00[EUR][1000 genomes]
rs73601364	1.00[EUR][1000 genomes]
rs73601368	1.00[EUR][1000 genomes]
rs73602836	1.00[EUR][1000 genomes]
rs73602840	1.00[EUR][1000 genomes]
rs73602841	1.00[EUR][1000 genomes]
rs73602844	1.00[EUR][1000 genomes]
rs73602860	1.00[EUR][1000 genomes]
rs7816233	1.00[EUR][1000 genomes]
rs7822011	1.00[EUR][1000 genomes]
rs7822111	1.00[EUR][1000 genomes]
rs7829470	1.00[EUR][1000 genomes]
rs7832039	0.93[EUR][1000 genomes]
rs7839445	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54132000-54141600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:54132000-54149400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:54135600-54137400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:54135600-54138000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:54135600-54138600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:54135800-54137000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr8:54135800-54137000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:54135800-54137200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:54135800-54138000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:54136000-54136800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:54136000-54137200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr8:54136000-54137800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:54136000-54137800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:54136400-54136800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:54136400-54136800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:54136400-54136800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:54136400-54136800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:54136400-54137000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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