Variant report

Variant	rs16919868
Chromosome Location	chr11:93780147-93780148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16919687	1.00[AMR][1000 genomes]
rs16919769	1.00[AMR][1000 genomes]
rs16919800	1.00[AMR][1000 genomes]
rs16919804	1.00[AMR][1000 genomes]
rs16919833	1.00[AMR][1000 genomes]
rs71480697	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93769800-93787800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:93778200-93784000	Weak transcription	HMEC	breast
3	chr11:93779000-93780200	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:93779400-93780200	Enhancers	Fetal Intestine Large	intestine
5	chr11:93779400-93780400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:93779400-93780400	Enhancers	Placenta	Placenta
7	chr11:93779600-93780400	Enhancers	Fetal Intestine Small	intestine
8	chr11:93779600-93780400	Flanking Active TSS	K562	blood
9	chr11:93779600-93780400	Enhancers	NHEK	skin
10	chr11:93779800-93780600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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