Variant report

Variant	rs16920154
Chromosome Location	chr9:104079706-104079707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10119499	1.00[EUR][1000 genomes]
rs10120225	1.00[EUR][1000 genomes]
rs10123365	1.00[EUR][1000 genomes]
rs16920139	0.82[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920140	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920142	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920167	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2000164	1.00[AMR][1000 genomes]
rs41274979	0.86[AFR][1000 genomes]
rs61297637	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104073000-104088600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:104073800-104082600	Weak transcription	Brain Anterior Caudate	brain
3	chr9:104074200-104080800	Enhancers	Liver	Liver
4	chr9:104074400-104081200	Weak transcription	Brain Substantia Nigra	brain
5	chr9:104075600-104079800	Weak transcription	Fetal Brain Male	brain
6	chr9:104075600-104081800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:104075600-104088600	Weak transcription	Brain Germinal Matrix	brain
8	chr9:104079000-104085600	Weak transcription	A549	lung
9	chr9:104079400-104080400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:104079600-104080000	Strong transcription	Brain Hippocampus Middle	brain
11	chr9:104079600-104080200	Genic enhancers	HepG2	liver
12	chr9:104079600-104080600	Strong transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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