Variant report

Variant	rs61297637
Chromosome Location	chr9:104070264-104070265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10119499	1.00[EUR][1000 genomes]
rs10120225	1.00[EUR][1000 genomes]
rs10123365	1.00[EUR][1000 genomes]
rs16920139	1.00[EUR][1000 genomes]
rs16920140	1.00[EUR][1000 genomes]
rs16920142	1.00[EUR][1000 genomes]
rs16920154	1.00[EUR][1000 genomes]
rs16920165	1.00[EUR][1000 genomes]
rs16920167	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104048800-104071600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:104068200-104071800	Weak transcription	HepG2	liver
3	chr9:104068400-104070800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:104069000-104070800	Enhancers	HMEC	breast
5	chr9:104069200-104070800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:104069200-104070800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:104069200-104070800	Enhancers	NHEK	skin
8	chr9:104069400-104070800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:104069400-104075000	Weak transcription	Fetal Brain Male	brain
10	chr9:104069600-104074800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:104069800-104073000	Weak transcription	Brain Anterior Caudate	brain
12	chr9:104069800-104074200	Weak transcription	Adipose Nuclei	Adipose
13	chr9:104069800-104075000	Weak transcription	Brain Germinal Matrix	brain
14	chr9:104069800-104075000	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:104070200-104070600	Enhancers	Esophagus	oesophagus
16	chr9:104070200-104072200	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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