Variant report

Variant	rs16920305
Chromosome Location	chr9:104163006-104163007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr9:104162993-104163188	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:104159627..104161244-chr9:104162690..104167076,3	K562	blood:
2	chr9:104159029..104163428-chr9:104247830..104250587,4	K562	blood:
3	chr9:104156777..104159647-chr9:104161503..104163892,2	K562	blood:

Variant related genes	Relation type
MRPL50	TF binding region
ENSG00000136870	Chromatin interaction
ENSG00000165152	Chromatin interaction
ENSG00000136897	Chromatin interaction

rs_ID	r²[population]
rs12003943	1.00[AMR][1000 genomes]
rs5007868	1.00[AMR][1000 genomes]
rs55729046	1.00[AMR][1000 genomes]
rs56319160	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6479051	1.00[AMR][1000 genomes]
rs73657937	1.00[AMR][1000 genomes]
rs73657940	1.00[AMR][1000 genomes]
rs73657948	1.00[AMR][1000 genomes]
rs73657950	1.00[AMR][1000 genomes]
rs73657952	1.00[AMR][1000 genomes]
rs73657955	1.00[AMR][1000 genomes]
rs7864833	1.00[AMR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104162000-104163200	Transcr. at gene 5' and 3'	Fetal Lung	lung
2	chr9:104162000-104163200	Enhancers	Spleen	Spleen
3	chr9:104162000-104163600	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
4	chr9:104162000-104164200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:104162000-104164600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:104162000-104169600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:104162200-104163200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:104162200-104163200	Enhancers	Stomach Mucosa	stomach
9	chr9:104162200-104163200	Transcr. at gene 5' and 3'	Dnd41	blood
10	chr9:104162200-104163400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr9:104162200-104163600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:104162200-104163800	Enhancers	Small Intestine	intestine
13	chr9:104162200-104165200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
14	chr9:104162400-104163200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:104162400-104163200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:104162400-104163200	Genic enhancers	Primary B cells from peripheral blood	blood
17	chr9:104162400-104163200	Genic enhancers	Primary T cells from cord blood	blood
18	chr9:104162400-104163200	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
19	chr9:104162400-104163200	Flanking Active TSS	Right Ventricle	heart
20	chr9:104162400-104163200	Enhancers	Thymus	Thymus
21	chr9:104162400-104163200	Transcr. at gene 5' and 3'	K562	blood
22	chr9:104162400-104163400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:104162400-104163400	Genic enhancers	Fetal Stomach	stomach
24	chr9:104162400-104163600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:104162400-104163600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:104162400-104163800	Transcr. at gene 5' and 3'	Brain Cingulate Gyrus	brain
27	chr9:104162400-104164200	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
28	chr9:104162400-104164800	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:104162400-104165000	Transcr. at gene 5' and 3'	HepG2	liver
30	chr9:104162400-104165200	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
31	chr9:104162400-104165400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr9:104162400-104166000	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:104162400-104167400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:104162600-104163200	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:104162600-104163200	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr9:104162600-104163200	Transcr. at gene 5' and 3'	Brain Inferior Temporal Lobe	brain
37	chr9:104162600-104163200	Transcr. at gene 5' and 3'	Brain Substantia Nigra	brain
38	chr9:104162600-104163200	Genic enhancers	Rectal Mucosa Donor 31	rectum
39	chr9:104162600-104163200	Genic enhancers	HMEC	breast
40	chr9:104162600-104163400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
41	chr9:104162600-104163400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
42	chr9:104162600-104163400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:104162600-104163600	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
44	chr9:104162600-104163800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
45	chr9:104162600-104164000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:104162600-104164000	Weak transcription	Aorta	Aorta
47	chr9:104162600-104164200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:104162600-104164600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:104162600-104165400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr9:104162600-104166200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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