Variant report

Variant	rs6479051
Chromosome Location	chr9:104191155-104191156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12003943	1.00[AMR][1000 genomes]
rs16920305	1.00[AMR][1000 genomes]
rs5007868	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55729046	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56319160	1.00[AMR][1000 genomes]
rs73657937	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73657940	1.00[AMR][1000 genomes]
rs73657948	1.00[AMR][1000 genomes]
rs73657950	1.00[AMR][1000 genomes]
rs73657952	1.00[AMR][1000 genomes]
rs73657955	1.00[AMR][1000 genomes]
rs7864833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1067884	chr9:104188775-104195222	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104185400-104193200	Strong transcription	Duodenum Mucosa	Duodenum
2	chr9:104187000-104192800	Genic enhancers	Liver	Liver
3	chr9:104188200-104196800	Weak transcription	Left Ventricle	heart
4	chr9:104189200-104191400	Enhancers	HepG2	liver
5	chr9:104189600-104193200	Weak transcription	Pancreas	Pancrea
6	chr9:104190800-104191200	Enhancers	GM12878-XiMat	blood
7	chr9:104190800-104193000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:104191000-104191400	Weak transcription	Fetal Intestine Small	intestine
9	chr9:104191000-104194600	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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