Variant report

Variant	rs16922703
Chromosome Location	chr8:58788078-58788079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16922718	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58780000-58789000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:58785200-58788400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:58785200-58793000	Enhancers	Fetal Heart	heart
4	chr8:58785600-58788600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:58786000-58789200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:58786400-58788600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:58786400-58789200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:58786800-58788400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:58787400-58788400	Enhancers	Right Atrium	heart
10	chr8:58787400-58788600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:58787400-58788600	Enhancers	Fetal Muscle Leg	muscle
12	chr8:58787600-58788200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:58787600-58788200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:58787600-58788600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:58787600-58789200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:58787800-58788200	Enhancers	Colon Smooth Muscle	Colon
17	chr8:58787800-58788400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:58787800-58788400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:58787800-58788400	Enhancers	Ovary	ovary
20	chr8:58787800-58788600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr8:58787800-58789200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:58788000-58788400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr8:58788000-58788400	Enhancers	Left Ventricle	heart
24	chr8:58788000-58788600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr8:58788000-58788600	Enhancers	Fetal Muscle Trunk	muscle
26	chr8:58788000-58789000	Weak transcription	Fetal Brain Female	brain
27	chr8:58788000-58789200	Enhancers	Right Ventricle	heart
28	chr8:58788000-58790200	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links