Variant report

Variant	rs16922718
Chromosome Location	chr8:58790009-58790010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16922703	0.92[ASN][1000 genomes]
rs16922723	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16922782	0.84[AMR][1000 genomes]
rs2325884	0.89[AMR][1000 genomes]
rs4515538	0.89[AMR][1000 genomes]
rs59681517	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73244791	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73244796	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73244800	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73244802	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73246606	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73246612	0.94[AMR][1000 genomes]
rs73246664	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58785200-58793000	Enhancers	Fetal Heart	heart
2	chr8:58788000-58790200	Enhancers	Fetal Brain Male	brain
3	chr8:58788600-58790200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:58789000-58790200	Enhancers	Fetal Brain Female	brain
5	chr8:58789000-58790800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:58789200-58790200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:58789200-58790400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:58789200-58804000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:58789400-58790400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:58789800-58790600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:58790000-58790400	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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