Variant report
| Variant | rs16923515 |
|---|---|
| Chromosome Location | chr11:32692147-32692148 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs16923537 | 0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16923607 | 1.00[YRI][hapmap] |
| rs2101380 | 1.00[AMR][1000 genomes] |
| rs58713017 | 1.00[AMR][1000 genomes] |
| rs58891984 | 1.00[AMR][1000 genomes] |
| rs58962065 | 1.00[AMR][1000 genomes] |
| rs59671737 | 1.00[AMR][1000 genomes] |
| rs7111293 | 1.00[AMR][1000 genomes] |
| rs7114146 | 1.00[AMR][1000 genomes] |
| rs7117035 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832109 | chr11:32661314-32830549 | Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv897189 | chr11:32677070-32751498 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
