Variant report

Variant	rs16923607
Chromosome Location	chr11:32876833-32876834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1022586	1.00[AMR][1000 genomes]
rs16923515	1.00[YRI][hapmap]
rs16923537	1.00[YRI][hapmap]
rs56713904	1.00[AMR][1000 genomes]
rs57091563	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58219633	1.00[AMR][1000 genomes]
rs58961816	1.00[AMR][1000 genomes]
rs60956326	1.00[AMR][1000 genomes]
rs7117035	1.00[YRI][hapmap]
rs7117497	1.00[AMR][1000 genomes]
rs7118746	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7395350	1.00[AMR][1000 genomes]
rs7482943	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940077	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	nsv897191	chr11:32805169-32903263	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv897192	chr11:32828760-32903263	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv897193	chr11:32838288-32903263	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32852800-32878800	Weak transcription	Placenta	Placenta
2	chr11:32853000-32877200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:32866000-32878200	Weak transcription	HMEC	breast
4	chr11:32869000-32878000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:32872000-32882000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:32872200-32882200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:32873400-32881800	Weak transcription	Lung	lung
8	chr11:32874000-32877000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:32874000-32880600	Weak transcription	Pancreas	Pancrea
10	chr11:32874200-32877000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:32874200-32877400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:32874200-32881600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:32874200-32881800	Weak transcription	Fetal Intestine Large	intestine
14	chr11:32874400-32877000	Weak transcription	Hela-S3	cervix
15	chr11:32874400-32879400	Weak transcription	NHEK	skin
16	chr11:32874800-32877400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:32874800-32878000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:32875000-32880600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr11:32875600-32877200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:32875600-32878000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:32876000-32878400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:32876000-32880000	Weak transcription	Fetal Intestine Small	intestine
23	chr11:32876800-32878000	Enhancers	Liver	Liver

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