Variant report

Variant	rs58219633
Chromosome Location	chr11:32934478-32934479
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32931627..32937839-chr11:32937972..32943855,8	K562	blood:
2	chr11:32916175..32919465-chr11:32932228..32934625,3	K562	blood:
3	chr11:32911547..32917607-chr11:32930395..32938117,12	K562	blood:
4	chr11:32933148..32935266-chr11:32937418..32940169,3	K562	blood:
5	chr11:32924828..32927562-chr11:32932566..32935396,2	MCF-7	breast:
6	chr11:32912527..32916011-chr11:32934159..32936611,3	K562	blood:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1022586	1.00[AMR][1000 genomes]
rs16923607	1.00[AMR][1000 genomes]
rs56713904	1.00[AMR][1000 genomes]
rs57091563	1.00[AMR][1000 genomes]
rs58961816	1.00[AMR][1000 genomes]
rs60956326	1.00[AMR][1000 genomes]
rs7117497	1.00[AMR][1000 genomes]
rs7118746	1.00[AMR][1000 genomes]
rs7395350	1.00[AMR][1000 genomes]
rs7482943	1.00[AMR][1000 genomes]
rs7940077	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32916000-32953200	Weak transcription	Pancreas	Pancrea
2	chr11:32916200-32935200	Weak transcription	Aorta	Aorta
3	chr11:32916200-32953200	Weak transcription	Right Ventricle	heart
4	chr11:32916400-32940000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:32916400-32952800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:32916400-32953200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:32916400-32953400	Weak transcription	NHLF	lung
8	chr11:32916400-32953600	Weak transcription	NHDF-Ad	bronchial
9	chr11:32916600-32940600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:32917000-32936000	Weak transcription	Thymus	Thymus
11	chr11:32917000-32952800	Weak transcription	Primary B cells from cord blood	blood
12	chr11:32917400-32951000	Weak transcription	HSMM	muscle
13	chr11:32917400-32953000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:32917600-32952800	Weak transcription	Fetal Stomach	stomach
15	chr11:32918000-32953200	Weak transcription	Fetal Brain Female	brain
16	chr11:32918600-32953600	Weak transcription	Fetal Brain Male	brain
17	chr11:32918800-32934600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:32919600-32953000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:32921200-32952800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:32921200-32953200	Weak transcription	Primary T cells from cord blood	blood
21	chr11:32921400-32951000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:32921600-32939800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:32921600-32940800	Weak transcription	Small Intestine	intestine
24	chr11:32921800-32935000	Weak transcription	HepG2	liver
25	chr11:32921800-32940200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:32921800-32941400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:32921800-32950800	Weak transcription	Fetal Thymus	thymus
28	chr11:32922400-32935600	Weak transcription	A549	lung
29	chr11:32922600-32940800	Weak transcription	Fetal Intestine Large	intestine
30	chr11:32922600-32951200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:32922800-32952800	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:32924000-32952800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:32924000-32952800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:32924000-32953200	Weak transcription	Left Ventricle	heart
35	chr11:32924400-32939400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:32924400-32939800	Weak transcription	HMEC	breast
37	chr11:32924400-32949600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr11:32924400-32951200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:32924600-32939600	Weak transcription	NHEK	skin
40	chr11:32925000-32939600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:32926400-32952800	Weak transcription	Ovary	ovary
42	chr11:32926800-32951000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:32927000-32939600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:32927200-32953200	Weak transcription	Fetal Heart	heart
45	chr11:32927400-32939600	Weak transcription	Fetal Lung	lung
46	chr11:32927400-32951200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:32927400-32953400	Weak transcription	Fetal Kidney	kidney
48	chr11:32928200-32952800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:32928400-32947200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:32930000-32939600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links